Category: Metabolic Network Data
 
Files:
xml.png Metabolic Network v2 HOT

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This SBML model of the metabolic network of P. aeruginosa CCBH4851 was generated by the NETGen system. This system performs  genomic scale reconstructions having the genome annotation and a reference model as inputs. For the reconstruction of the metabolic network of P.aeruginosa CCBH4851, the metabolic network model of P.aeruginosa strain PAO1, published in 2017, was used as reference. The P.aeruginosa CCBH4851 metabolic network is  represented as a SBML Level 3 file, and this second version encompasses  1139 genes, 1450 reactions,1280 metabolites and 576 EC numbers. The biomass reaction flux generated in the FBA simulation of this metabolic network model is 12.470973 mmol/gDCW/h.


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17-07-2018
1.54 MB
221
xlsx.png Knowledge Base (Metabolic Network v2) HOT

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The knowledge base is a database created in MySQL to support and store the data of all reconstructions executed by NETGen. This knowledge base has a relational structure containing information of the following entities: reconstructions, organisms, genomes, genes, proteins, reactions, GPRs relations, enzymes and metabolites. A  snapshot of this database, generated after the reconstruction of the P.aeruginosa CCBH4851 metabolic network model v2,  is available as an Excel spreadsheet.


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17-07-2018
868.88 KB
259
xml.png Metabolic Network v3 HOT

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 This SBML model of the metabolic network of P.aeruginosa CCBH4851 is a curated version of the metabolic network v2. This P.aeruginosa CCBH4851 metabolic network is  represented as a SBML Level 3 file, and the biomass reaction flux generated in the FBA simulation of this metabolic network model is 1.036524 mmol/gDCW/h.




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08-12-2018
2.09 MB
154